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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27162480_27167424_F

Intron Information:

Intron Rank:
125159
Intron Class:
major
Intron Phase:
Intron Coordinates:
27162480 - 27167424
Intron Length:
4945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
ATCTACCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
61.1
0.28
1
67
29.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
58.5
0.26
1.9
71.82
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047733
27160353 - 27181972
21620