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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27167118_27167424_F

Intron Information:

Intron Rank:
125156
Intron Class:
major
Intron Phase:
Intron Coordinates:
27167118 - 27167424
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
ATCTACCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
61.1
0.28
1
67
29.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
58.5
0.26
1.9
71.82
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044728
27160353 - 27181972
21620