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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27167512_27181021_F

Intron Information:

Intron Rank:
125157
Intron Class:
major
Intron Phase:
Intron Coordinates:
27167512 - 27181021
Intron Length:
13510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
TTTTTTCTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
87.4
0.84
0.8
82.4
34
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
55.9
0.18
1.9
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044728
27160353 - 27181972
21620
ENSAPLT00000047733
27160353 - 27181972
21620