Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2719571_2722292_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2719571 - 2722292

Intron Length:

2722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGATGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TTTCAAGTAATT

Flanking Amino Acid:

NRNNYHRGIDWYMDFFPAPS

Intron Amino Acid Position:

648

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

65.2

41.6

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

79.9

0.67

0.8

73.3

37.1

Minor 5ss

37.5

-1.4

44.3

45.4

Minor BPS

47.2

-0.1

2.3

75.83

40.6

Associated Gene:

Gene:

NDST3

Ensembl Gene ID:

ENSAPLG00000014790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015449

2666981 - 2734558

67578