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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2722468_2724899_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2722468 - 2724899
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ACTTGTTTTACA
Flanking Amino Acid:
PSDRAYSWYQHQRSHEDPAA
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
82
38.1
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
82.6
0.73
0.9
76
37.4
Minor 5ss
44.2
-0.6
3.2
66.1
45
Minor BPS
50.4
0
2.1
64.86
41.7

Associated Gene:

Gene:
NDST3
Ensembl Gene ID:
ENSAPLG00000014790
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015449
2666981 - 2734558
67578