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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27235970_27237733_F

Intron Information:

Intron Rank:
133622
Intron Class:
major
Intron Phase:
Intron Coordinates:
27235970 - 27237733
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.4
0.55
0.9
69.4
41.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
51.3
0.12
1.9
75.21
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021873
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034066
27232826 - 27237799
4974