About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27235970_27249474_F

Intron Information:

Intron Rank:
133620
Intron Class:
major
Intron Phase:
Intron Coordinates:
27235970 - 27249474
Intron Length:
13505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
AACTTTCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
45
-0.3
1.8
59.02
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021873
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046549
27232826 - 27249933
17108
ENSAPLT00000025544
27234837 - 27249933
15097