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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27248633_27252558_R

Intron Information:

Intron Rank:
147322
Intron Class:
major
Intron Phase:
Intron Coordinates:
27248633 - 27252558
Intron Length:
3926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCTGTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
77.6
33.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
38
-1.4
3.3
48.1
47.5
Minor BPS
49.8
-0
2.3
72.36
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040270
27248477 - 27257191
8715