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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2725071_2728478_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2725071 - 2728478
Intron Length:
3408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
RWLTYFPPYQLLIIDGQQLR
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.4
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88
0.85
0.7
85.1
29.4
Minor 5ss
29
-2.4
2.7
32.5
42.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
NDST3
Ensembl Gene ID:
ENSAPLG00000014790
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015449
2666981 - 2734558
67578