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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27254548_27257132_R

Intron Information:

Intron Rank:
147324
Intron Class:
major
Intron Phase:
Intron Coordinates:
27254548 - 27257132
Intron Length:
2585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGATCCTAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
76.2
0.59
0.9
73.7
35.9
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
61.3
0.33
1.7
66.52
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040270
27248477 - 27257191
8715