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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27285624_27301273_F

Intron Information:

Intron Rank:
144797
Intron Class:
major
Intron Phase:
Intron Coordinates:
27285624 - 27301273
Intron Length:
15650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044353
27273162 - 27301474
28313