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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27294406_27301273_F

Intron Information:

Intron Rank:
144795
Intron Class:
major
Intron Phase:
Intron Coordinates:
27294406 - 27301273
Intron Length:
6868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028049
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019033
27293756 - 27301929
8174