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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2730841_2731500_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2730841 - 2731500
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
TTATATCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAT
Flanking Amino Acid:
GRKYPPMDSECRAFLSTYYR
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.2
0.52
1
71.8
38.7
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
67.1
0.61
1.7
84.88
34.6

Associated Gene:

Gene:
NDST3
Ensembl Gene ID:
ENSAPLG00000014790
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015449
2666981 - 2734558
67578