Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27346838_27347890_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27346838 - 27347890

Intron Length:

1053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACCA

5'SS Class:

strong_major

3'SS Sequence:

TTTAAACCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTCTTTTTAAAC

Flanking Amino Acid:

NGAEWYSFTGGMADFNYLHT

Intron Amino Acid Position:

432

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

67.7

37.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.47

0.9

64.1

37.7

Minor 5ss

31.6

-2.1

3.1

40.3

45.3

Minor BPS

69.5

0.59

1.3

74.65

36.2

Associated Gene:

Gene:

CPZ

Ensembl Gene ID:

ENSAPLG00000010071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010511

27340873 - 27364288

23416

ENSAPLT00000038626

27340873 - 27374770

33898