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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27348027_27351042_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27348027 - 27351042
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTTCAAAACC
Flanking Amino Acid:
KEFSPTPDEKMFKMLAKAYA
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
55.1
0.14
1.9
71.69
39.3

Associated Gene:

Gene:
CPZ
Ensembl Gene ID:
ENSAPLG00000010071
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038626
27340873 - 27374770
33898
ENSAPLT00000010511
27340873 - 27364288
23416