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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27362231_27364260_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27362231 - 27364260
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TCTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
MTEGTVKEPGQCQTVQKAK
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.6
0.89
0.7
84.8
28.7
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
CPZ
Ensembl Gene ID:
ENSAPLG00000010071
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010511
27340873 - 27364288
23416