About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27363_31210_F

Intron Information:

Intron Rank:
125367
Intron Class:
major
Intron Phase:
Intron Coordinates:
27363 - 31210
Intron Length:
3848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.6
87.9
22.2
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
83.6
1.05
1.4
91.85
28.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040415
14626 - 31231
16606