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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27389926_27393916_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27389926 - 27393916
Intron Length:
3991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTCTCTTTAATG
Flanking Amino Acid:
VICFGPYIITRLIELLPFVT
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
71.2
0.48
1
66.1
43.7
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
69.9
0.49
1.4
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010509
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010933
27389688 - 27395168
5481