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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27394031_27394500_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27394031 - 27394500
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
ATTAACCCACCG
Flanking Amino Acid:
TLVLLVDIHPSVKQRCLNEQ
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
89.5
0.89
0.6
84.5
23.1
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
39.3
-0.9
2.1
49.09
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010509
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010933
27389688 - 27395168
5481