About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2746131_2747660_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2746131 - 2747660
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
ACAGTAACTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GAGACAGTAACT
Flanking Amino Acid:
SCYITGWGDTVLFSGRAYSR
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
46.2
-0.2
1.7
48.9
43.3
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
46
-0.2
2.2
64.26
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026152
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039067
2745605 - 2755073
9469