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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27463256_27463764_R

Intron Information:

Intron Rank:
136538
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
27463256 - 27463764
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGCTTGC
5'SS Class:
weak_major
3'SS Sequence:
TCTTGATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTCTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.2
56.8
43.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
73.8
0.54
0.9
66
39.9
Minor 5ss
44.8
-0.6
3
58.3
41.6
Minor BPS
69.6
0.7
1.2
80.91
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020901
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033249
27460836 - 27463825
2990