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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27475240_27478663_R

Intron Information:

Intron Rank:
133045
Intron Class:
major
Intron Phase:
Intron Coordinates:
27475240 - 27478663
Intron Length:
3424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GTTCCCATATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.7
34.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
27.5
-2.6
3
30.5
36.5
Minor BPS
48.5
-0.2
1.9
58.91
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018817
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021891
27471153 - 27478849
7697