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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27478013_27478663_R

Intron Information:

Intron Rank:
133047
Intron Class:
major
Intron Phase:
Intron Coordinates:
27478013 - 27478663
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
AACTGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AGGTCTGAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.7
34.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
69.7
0.44
1
58.8
45.6
Minor 5ss
27.5
-2.6
3
30.5
36.5
Minor BPS
46.8
-0.1
2.3
66.42
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018817
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040321
27476982 - 27478849
1868