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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27508153_27513655_F

Intron Information:

Intron Rank:
132554
Intron Class:
major
Intron Phase:
Intron Coordinates:
27508153 - 27513655
Intron Length:
5503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGAATTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.6
0.49
0.9
70.4
40.1
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
60.9
0.32
1.3
62.89
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021232
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023166
27507960 - 27515247
7288