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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27564138_27565719_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27564138 - 27565719
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
LLKNNHQVFEVLNGRVHIRD
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
71.7
37.9
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
TRMT44
Ensembl Gene ID:
ENSAPLG00000010512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010944
27562407 - 27578633
16227