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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27568177_27568762_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27568177 - 27568762
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGGT
5'SS Class:
major
3'SS Sequence:
ATCCTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTATCCTTTATC
Flanking Amino Acid:
LTPWIPVIAARSSYSCSYFV
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.2
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.9
0.47
0.8
65.5
29.8
Minor 5ss
33.4
-1.9
3.5
50.3
45.9
Minor BPS
72.3
0.68
1.5
79.49
35.7

Associated Gene:

Gene:
TRMT44
Ensembl Gene ID:
ENSAPLG00000010512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010944
27562407 - 27578633
16227