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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27571508_27573783_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27571508 - 27573783
Intron Length:
2276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TAACTCTAAAAT
Flanking Amino Acid:
EDVAIATYLLILWEEERKEK
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
73
0.57
1
73.6
28.6
Major PPT
79.1
0.66
0.8
73
37.3
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
51.1
0.11
1.8
68.75
41.4

Associated Gene:

Gene:
TRMT44
Ensembl Gene ID:
ENSAPLG00000010512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010944
27562407 - 27578633
16227