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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27573853_27575082_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27573853 - 27575082
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
LKEKYKEMVKVWPEVTDPEK
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69.7
0.44
1.1
71.4
33.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TRMT44
Ensembl Gene ID:
ENSAPLG00000010512
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010944
27562407 - 27578633
16227