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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27584315_27585505_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27584315 - 27585505
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCATT
Flanking Amino Acid:
PCLQYFLHCGVFAGTILSAS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
61.1
0.43
2
83.58
37.4

Associated Gene:

Gene:
ACOX3
Ensembl Gene ID:
ENSAPLG00000010626
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018286
27581773 - 27614346
32574
ENSAPLT00000011099
27581773 - 27613927
32155