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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27603872_27605567_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27603872 - 27605567
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTCTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CTCTTTTCCACA
Flanking Amino Acid:
VSVEDCMDSSVPLAAYKWLV
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
69.7
43.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
83.6
0.76
0.7
79.2
26.5
Minor 5ss
63.8
0.47
2.8
81.8
38.5
Minor BPS
46.6
-0.2
1.9
58
42.5

Associated Gene:

Gene:
ACOX3
Ensembl Gene ID:
ENSAPLG00000010626
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018286
27581773 - 27614346
32574
ENSAPLT00000011099
27581773 - 27613927
32155