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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27609931_27613807_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27609931 - 27613807
Intron Length:
3877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATGT
Flanking Amino Acid:
NSPIGKASGELYKNMWSEIL
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
52.5
0.16
1.9
75.61
41.6

Associated Gene:

Gene:
ACOX3
Ensembl Gene ID:
ENSAPLG00000010626
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018286
27581773 - 27614346
32574
ENSAPLT00000011099
27581773 - 27613927
32155