About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27613870_27614327_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27613870 - 27614327
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGCAGA
5'SS Class:
major
3'SS Sequence:
TTTGAGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
ATTTTTTTGAGA
Flanking Amino Acid:
QGNKALNRPSWIIFAK*
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
57.7
43
Major BPS
66.7
0.41
1
57.8
39
Major PPT
69.3
0.43
1
59.5
45.7
Minor 5ss
32
-2
3.1
36.2
42.8
Minor BPS
60.7
0.33
1.6
71.39
34.7

Associated Gene:

Gene:
ACOX3
Ensembl Gene ID:
ENSAPLG00000010626
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018286
27581773 - 27614346
32574