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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27675958_27677557_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27675958 - 27677557
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GTGTTCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGCTATATAAAT
Flanking Amino Acid:
IGIRMLTITPALVEELKHNN
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
76.2
39.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.6
0.67
0.8
77.7
36.7
Minor 5ss
41.2
-1
2.8
50.4
39.3
Minor BPS
48.3
-0
1.9
68.06
42.2

Associated Gene:

Gene:
HTRA3
Ensembl Gene ID:
ENSAPLG00000020579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044899
27674588 - 27698379
23792