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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27683592_27686244_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27683592 - 27686244
Intron Length:
2653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTCCCTTATGT
Flanking Amino Acid:
DYIQTDAIINYGNSGGPLVN
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.8
0.72
0.9
75.6
38.2
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
58.8
0.36
1.9
78.39
43.5

Associated Gene:

Gene:
HTRA3
Ensembl Gene ID:
ENSAPLG00000020579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044899
27674588 - 27698379
23792