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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27687364_27689132_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27687364 - 27689132
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTCCCTTATGA
Flanking Amino Acid:
PAVVHIELFLRHPLFGRNVP
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
75.5
0.63
1
66
40.9
Major PPT
72.8
0.51
0.9
67.6
37.8
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
62.1
0.38
1.9
76.85
40.2

Associated Gene:

Gene:
HTRA3
Ensembl Gene ID:
ENSAPLG00000020579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044899
27674588 - 27698379
23792