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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2771871_2774030_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2771871 - 2774030
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTCTTCTTACAG
Flanking Amino Acid:
ATVVCRQLALGEKGTAKHIP
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
86.6
0.82
0.7
80.6
30.7
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
56.3
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001152
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001197
2764054 - 2778381
14328