Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27726429_27730977_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27726429 - 27730977

Intron Length:

4549

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGAACC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTACTTTTAATG

Flanking Amino Acid:

REMSLFFYQKMVKGRKKIMN

Intron Amino Acid Position:

1317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.8

1.03

0.8

86.3

26.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.7

0.85

0.8

85.7

33.4

Minor 5ss

24.4

-2.9

3.7

35.3

40.9

Minor BPS

64.6

0.32

1.3

64.97

37.2

Associated Gene:

Gene:

SH3TC1

Ensembl Gene ID:

ENSAPLG00000011482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031185

27726345 - 27762376

36032