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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27731545_27732439_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27731545 - 27732439
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
GTTATCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATCCTGATTT
Flanking Amino Acid:
KASLMLSVNLGNQLNERIAY
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69
0.43
0.9
67.9
38.7
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
63.9
0.52
1.7
82
39.4

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031185
27726345 - 27762376
36032
ENSAPLT00000012012
27730903 - 27762376
31474
ENSAPLT00000047633
27730903 - 27812987
82085