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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27733009_27735137_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27733009 - 27735137
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTTCCCTCATT
Flanking Amino Acid:
QNELVDLYIQVAQDAALHTG
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
64.1
0.52
2.1
88.6
36.6

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031185
27726345 - 27762376
36032
ENSAPLT00000012012
27730903 - 27762376
31474
ENSAPLT00000047633
27730903 - 27812987
82085