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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27735289_27736721_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27735289 - 27736721
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCCCCCATT
Flanking Amino Acid:
SQLYLSLGTERAYRSALEYT
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.8
0.6
0.8
73.3
30
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
49.9
0.08
2.3
81.02
40.9

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031185
27726345 - 27762376
36032
ENSAPLT00000012012
27730903 - 27762376
31474
ENSAPLT00000047633
27730903 - 27812987
82085