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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27740787_27741675_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27740787 - 27741675
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TCTTTCTTACAG
Flanking Amino Acid:
ITDVCSVYRIDQLEEQEFQK
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
58.7
0.22
1.2
67
38
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
56.9
0.08
1.8
63.72
44.3

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031185
27726345 - 27762376
36032
ENSAPLT00000012012
27730903 - 27762376
31474
ENSAPLT00000047633
27730903 - 27812987
82085