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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2774170_2778026_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2774170 - 2778026
Intron Length:
3857

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
CTTCTTTTAACT
Flanking Amino Acid:
QLESVWQVLLRSVRLQGGKN
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
75.5
37
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
74.6
0.55
0.9
71
38.8
Minor 5ss
29.7
-2.3
4
41.2
39.1
Minor BPS
74.4
0.84
1.2
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001152
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001197
2764054 - 2778381
14328