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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27741804_27742712_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27741804 - 27742712
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
AGTTGCTTATTT
Flanking Amino Acid:
NSVKLDLPGNTVQDLDFLKA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
76.2
39.9
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
76.8
0.6
0.9
77.9
35.9
Minor 5ss
38.6
-1.3
3.6
56.4
42
Minor BPS
55.4
0.25
2
74.98
42.1

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012012
27730903 - 27762376
31474
ENSAPLT00000047633
27730903 - 27812987
82085
ENSAPLT00000031185
27726345 - 27762376
36032