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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27742909_27743813_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27742909 - 27743813
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATATTTATCT
Flanking Amino Acid:
KTECKSIGQVATGSCLAVMN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.3
0.52
0.9
68.1
36.3
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
57.5
0.31
1.8
75.19
41.1

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047633
27730903 - 27812987
82085
ENSAPLT00000031185
27726345 - 27762376
36032
ENSAPLT00000012012
27730903 - 27762376
31474