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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27747639_27750713_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27747639 - 27750713
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
DSREVMAVFSELSARLLSIH
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
67.1
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
35.5
-1.6
3
42
44.5
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
SH3TC1
Ensembl Gene ID:
ENSAPLG00000011482
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047633
27730903 - 27812987
82085
ENSAPLT00000031185
27726345 - 27762376
36032