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Intron Name: Anas_platyrhynchos_platyrhynchos_4_27755210_27762196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

27755210 - 27762196

Intron Length:

6987

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

75.1

35.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.8

0.83

0.7

85.4

28.6

Minor 5ss

32.4

-2

3.2

42.3

44.8

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

SH3TC1

Ensembl Gene ID:

ENSAPLG00000011482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031185

27726345 - 27762376

36032