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Intron Name: Anas_platyrhynchos_platyrhynchos_4_27755210_27800027_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

27755210 - 27800027

Intron Length:

44818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.5

28.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.8

0.83

0.7

85.4

28.6

Minor 5ss

32.3

-2

2.6

35.1

34.3

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

SH3TC1

Ensembl Gene ID:

ENSAPLG00000011482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047633

27730903 - 27812987

82085