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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2778119_2778157_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2778119 - 2778157
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATAAAGC
5'SS Class:
weak_major
3'SS Sequence:
CTTCTTTTTGGAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATTCCTTTGAAG
Flanking Amino Acid:
EEPSGPRVLYILLKVGWAVF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
57.9
39.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
69.6
0.44
1.7
79.9
32.1
Minor 5ss
41.7
-0.9
3
56
41.9
Minor BPS
58.4
0.12
1.5
63.49
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001152
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001197
2764054 - 2778381
14328