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Intron Name: Anas_platyrhynchos_platyrhynchos_4_27800124_27812868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

27800124 - 27812868

Intron Length:

12745

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGTCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

CATGCTTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

75.9

34.3

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

80.3

0.68

0.7

73.6

31.4

Minor 5ss

41.1

-1

3.3

57.2

41.4

Minor BPS

62.7

0.48

1.6

73.99

42.9

Associated Gene:

Gene:

SH3TC1

Ensembl Gene ID:

ENSAPLG00000011482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047633

27730903 - 27812987

82085