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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27811558_27825950_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27811558 - 27825950
Intron Length:
14393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GCCTTCTGAGTC
Flanking Amino Acid:
YFHIKCFVCKACGCDLAQGG
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
89.8
0.89
0.6
85.3
22.1
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
46.8
-0.2
1.6
51.09
40.4

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021471
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841